Actin mesh quantification#
[1]:
# from meshure.actimg_binary import get_ActImgBinary
# import numpy as np
# import matplotlib.pyplot as plt
[2]:
# actimg_binary = get_ActImgBinary(actimg)
# actimg_binary.visualise('original', 1)
[3]:
# actimg_binary.surface_area(n_dilations_erosions=(0,2),closing_structure=None,extra_dilate_fill=True,verbose=False)
# print(actimg_binary.log)
# actimg_binary.save_log()
[4]:
# actimg_binary.mesh_holes_area(visualise=True, saturation_area=0.6)
# actimg_binary._saturation_area
# np.isclose(np.max(actimg_binary.f_labels_area), 2.6)
# plt.imshow(actimg_binary.f_labels_area, cmap='coolwarm'); plt.show()
# actimg_binary.visualise_segmentation(save=False)
# actimg_binary.mesh_density()
# actimg_binary.quantify_mesh()
# actimg_binary.peripheral_mesh_density()