Index _ | A | D | G | I | L | M | N | P | Q | R | S | T | V | Z _ _aggregate_line_profiles() (in module meshure.actimg.ActImg) _analysis_pipeline() (in module meshure.actimg_collection.ActImgCollection) _call_hist() (in module meshure.actimg.ActImg) _check_boundaries() (in module meshure.actimg_binary.ActImgBinary) _clean_up_surface() (in module meshure.actimg_binary.ActImgBinary) _extract_parameters() (in module meshure.actimg_collection.ActImgCollection) _fill_contour_img() (in module meshure.actimg_binary.ActImgBinary) _get_contour() (in module meshure.actimg_binary.ActImgBinary) _get_img_time() (in module meshure.actimg_binary.ActImgBinary) _get_oriented_filter() (in module meshure.actimg.ActImg) _initialise_curr_filenames_and_planes() (in module meshure.actimg_collection.ActImgCollection) _initialise_res_dir() (in module meshure.actimg_collection.ActImgCollection) _pipeline_construct() (in module meshure.actimg_collection.ActImgCollection) _return_params() (in module meshure.actimg_collection.ActImgCollection) _threshold_preview_cases() (in module meshure.actimg.ActImg) _update_log() (in module meshure.actimg.ActImg) _visualise_html() (in module meshure.actimg_collection.ActImgCollection) _visualise_oriented_filters() (in module meshure.actimg.ActImg) A ActImg() (in module meshure.actimg) ActImgBinary() (in module meshure.actimg_binary) ActImgCollection() (in module meshure.actimg_collection) D deconvolved (in module meshure.actimg) depth (in module meshure.actimg) G get_ActImg() (in module meshure.actimg) get_ActImgBinary() (in module meshure.actimg_binary) get_focal_planes() (in module meshure.actimg_collection.ActImgCollection) I image_stack (in module meshure.actimg) L load_ActImg() (in module meshure.actimg) M manipulated_depth (in module meshure.actimg) manipulated_stack (in module meshure.actimg) manipulated_substack_inds (in module meshure.actimg) mesh_density() (in module meshure.actimg_binary.ActImgBinary) mesh_holes_area() (in module meshure.actimg_binary.ActImgBinary) meta (in module meshure.actimg) N normalise() (in module meshure.actimg.ActImg) nuke() (in module meshure.actimg.ActImg) P parametrise_pipeline() (in module meshure.actimg_collection.ActImgCollection) peripheral_mesh_density() (in module meshure.actimg_binary.ActImgBinary) print_summary() (in module meshure.actimg_collection.ActImgCollection) Q quantify_mesh() (in module meshure.actimg_binary.ActImgBinary) R redefine_pipeline() (in module meshure.actimg_collection.ActImgCollection) resolution (in module meshure.actimg) run_analysis() (in module meshure.actimg_collection.ActImgCollection) S save() (in module meshure.actimg.ActImg) save_estimated_parameters() (in module meshure.actimg_binary.ActImgBinary) save_estimated_params() (in module meshure.actimg.ActImg) save_log() (in module meshure.actimg_binary.ActImgBinary) shape (in module meshure.actimg) steerable_gauss_2order() (in module meshure.actimg.ActImg) steerable_gauss_2order_thetas() (in module meshure.actimg.ActImg) surface_area() (in module meshure.actimg_binary.ActImgBinary) T threshold_dynamic() (in module meshure.actimg.ActImg) threshold_manual() (in module meshure.actimg.ActImg) title (in module meshure.actimg) V visualise() (in module meshure.actimg.ActImg) visualise_segmentation() (in module meshure.actimg_binary.ActImgBinary) visualise_stack() (in module meshure.actimg.ActImg) Z z_project_max() (in module meshure.actimg.ActImg) z_project_min() (in module meshure.actimg.ActImg)